551-1174-00L  Systems Biology

SemesterSpring Semester 2019
LecturersU. Sauer, K. M. Borgwardt, J. Stelling, N. Zamboni
Periodicityyearly recurring course
Language of instructionGerman



Courses

NumberTitleHoursLecturers
551-1174-00 VSystembiologie2 hrs
Thu15-17HCI G 3 »
U. Sauer, K. M. Borgwardt, J. Stelling, N. Zamboni
551-1174-00 USystembiologie
Die Übungen können zum Teil in englischer Sprache angeboten werden.
2 hrs
Tue15-17LEE C 104 »
15-17LEE C 114 »
15-17LEE D 101 »
15-17LEE D 105 »
15-17LEE E 101 »
U. Sauer, K. M. Borgwardt, J. Stelling, N. Zamboni

Catalogue data

AbstractThe course teaches computational methods and first hands-on applications by starting from biological problems/phenomena that students in the 4th semester are somewhat familiar with. During the exercises, students will obtain first experience with programming their own analyses/models for data analysis/interpretation.
ObjectiveWe will teach little if any novel biological knowledge or analysis methods, but focus on training the ability of use existing knowledge (for example from enzyme kinetics, regulatory mechanisms or analytical methods) to understand biological problems that arise when considering molecular elements in their context and to translate some of these problems into a form that can be solved by computational methods. Specific goals are:
- understand the limitations of intuitive reasoning
- obtain a first overview of computational approaches in systems biology
- train ability to translate biological problems into computational problems
- solve practical problems by programming with MATLAB
- make first experiences in computational interpretation of biological data
- understand typical abstractions in modeling molecular systems
ContentDuring the first 7 weeks, the will focus on mechanistic modeling. Starting from simple enzyme kinetics, we will move through the dynamics of small pathways that also include regulation and end with flux balance analysis of a medium size metabolic network. During the second 7 weeks, the focus will shift to the analysis of larger data sets, such as metabolomics and transcriptomics that are often generated in biology. Here we will go through multivariate statistical methods that include clustering and principal component analysis, ending with first methods to learn networks from data.
Lecture notesKein Skript
LiteratureThe course is not taught by a particular book, but two books are suggested for further reading:
- Systems Biology (Klipp, Herwig, Kowald, Wierling und Lehrach) Wiley-VCH 2009
- A First Course in Systems Biology (Eberhardt O. Voight) Garland Science 2012

Performance assessment

Performance assessment information (valid until the course unit is held again)
Performance assessment as a semester course
ECTS credits4 credits
ExaminersU. Sauer, K. M. Borgwardt, J. Stelling, N. Zamboni
Typesession examination
Language of examinationGerman
RepetitionThe performance assessment is offered every session. Repetition possible without re-enrolling for the course unit.
Mode of examinationwritten 120 minutes
Additional information on mode of examinationDie Vorlesung wird durch Übungen auf einer Lernplattform (Moodle) und Gruppenübungen begleitet. Bei erfolgreicher Teilnahme an den Übungen (mindestens 75% der Aktivitäten müssen erfolgreich abgeschlossen sein) können die Studierenden einen Bonus von 0.25 Notenpunkten erhalten, der auf die Schlussnote der Prüfung angerechnet werden kann. Die Maximalnote 6 für die Lerneinheit kann auch erreicht werden, wenn nur die Sessionsprüfung absolviert wird.
Bei einer allfälligen Prüfungsrepetition wird standardmässig die während des Kurses erbrachte Leistung übernommen. Wird dies nicht gewünscht muss der Kurs erneut belegt werden.
Written aidsNone
This information can be updated until the beginning of the semester; information on the examination timetable is binding.

Learning materials

No public learning materials available.
Only public learning materials are listed.

Groups

No information on groups available.

Restrictions

There are no additional restrictions for the registration.

Offered in

ProgrammeSectionType
Biology BachelorBiodiversityOInformation
Biology BachelorCellular and Molecular BiologyOInformation
Biology BachelorBiological ChemistryWInformation
Food Science BachelorElectives (ONLY for Programme Regulations 2016)WInformation