Search result: Catalogue data in Autumn Semester 2018
Computational Science and Engineering Bachelor | ||||||
For All Programme Regulations | ||||||
Additional Electives from the Fields of Specialization (CSE Master) | ||||||
Number | Title | Type | ECTS | Hours | Lecturers | |
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252-0535-00L | Advanced Machine Learning | W | 8 credits | 3V + 2U + 2A | J. M. Buhmann | |
Abstract | Machine learning algorithms provide analytical methods to search data sets for characteristic patterns. Typical tasks include the classification of data, function fitting and clustering, with applications in image and speech analysis, bioinformatics and exploratory data analysis. This course is accompanied by practical machine learning projects. | |||||
Objective | Students will be familiarized with advanced concepts and algorithms for supervised and unsupervised learning; reinforce the statistics knowledge which is indispensible to solve modeling problems under uncertainty. Key concepts are the generalization ability of algorithms and systematic approaches to modeling and regularization. Machine learning projects will provide an opportunity to test the machine learning algorithms on real world data. | |||||
Content | The theory of fundamental machine learning concepts is presented in the lecture, and illustrated with relevant applications. Students can deepen their understanding by solving both pen-and-paper and programming exercises, where they implement and apply famous algorithms to real-world data. Topics covered in the lecture include: Fundamentals: What is data? Bayesian Learning Computational learning theory Supervised learning: Ensembles: Bagging and Boosting Max Margin methods Neural networks Unsupservised learning: Dimensionality reduction techniques Clustering Mixture Models Non-parametric density estimation Learning Dynamical Systems | |||||
Lecture notes | No lecture notes, but slides will be made available on the course webpage. | |||||
Literature | C. Bishop. Pattern Recognition and Machine Learning. Springer 2007. R. Duda, P. Hart, and D. Stork. Pattern Classification. John Wiley & Sons, second edition, 2001. T. Hastie, R. Tibshirani, and J. Friedman. The Elements of Statistical Learning: Data Mining, Inference and Prediction. Springer, 2001. L. Wasserman. All of Statistics: A Concise Course in Statistical Inference. Springer, 2004. | |||||
Prerequisites / Notice | The course requires solid basic knowledge in analysis, statistics and numerical methods for CSE as well as practical programming experience for solving assignments. Students should have followed at least "Introduction to Machine Learning" or an equivalent course offered by another institution. | |||||
636-0017-00L | Computational Biology | W | 6 credits | 3G + 2A | T. Stadler, C. Magnus, T. Vaughan | |
Abstract | The aim of the course is to provide up-to-date knowledge on how we can study biological processes using genetic sequencing data. Computational algorithms extracting biological information from genetic sequence data are discussed, and statistical tools to understand this information in detail are introduced. | |||||
Objective | Attendees will learn which information is contained in genetic sequencing data and how to extract information from this data using computational tools. The main concepts introduced are: * stochastic models in molecular evolution * phylogenetic & phylodynamic inference * maximum likelihood and Bayesian statistics Attendees will apply these concepts to a number of applications yielding biological insight into: * epidemiology * pathogen evolution * macroevolution of species | |||||
Content | The course consists of four parts. We first introduce modern genetic sequencing technology, and algorithms to obtain sequence alignments from the output of the sequencers. We then present methods for direct alignment analysis using approaches such as BLAST and GWAS. Second, we introduce mechanisms and concepts of molecular evolution, i.e. we discuss how genetic sequences change over time. Third, we employ evolutionary concepts to infer ancestral relationships between organisms based on their genetic sequences, i.e. we discuss methods to infer genealogies and phylogenies. Lastly, we introduce the field of phylodynamics, the aim of which is to understand and quantify population dynamic processes (such as transmission in epidemiology or speciation & extinction in macroevolution) based on a phylogeny. Throughout the class, the models and methods are illustrated on different datasets giving insight into the epidemiology and evolution of a range of infectious diseases (e.g. HIV, HCV, influenza, Ebola). Applications of the methods to the field of macroevolution provide insight into the evolution and ecology of different species clades. Students will be trained in the algorithms and their application both on paper and in silico as part of the exercises. | |||||
Lecture notes | Lecture slides will be available on moodle. | |||||
Literature | The course is not based on any of the textbooks below, but they are excellent choices as accompanying material: * Yang, Z. 2006. Computational Molecular Evolution. * Felsenstein, J. 2004. Inferring Phylogenies. * Semple, C. & Steel, M. 2003. Phylogenetics. * Drummond, A. & Bouckaert, R. 2015. Bayesian evolutionary analysis with BEAST. | |||||
Prerequisites / Notice | Basic knowledge in linear algebra, analysis, and statistics will be helpful. Programming in R will be required for the project work (compulsory continuous performance assessments). We provide an R tutorial and help sessions during the first two weeks of class to learn the required skills. However, in case you do not have any previous experience with R, we strongly recommend to get familiar with R prior to the semester start. For the D-BSSE students, we highly recommend the voluntary course „Introduction to Programming“, which takes place at D-BSSE from Wednesday, September 12 to Friday, September 14, i.e. BEFORE the official semester starting date Link For the Zurich-based students without R experience, we recommend the R course Link, or working through the script provided as part of this R course. | |||||
Case Studies | ||||||
Number | Title | Type | ECTS | Hours | Lecturers | |
401-3667-68L | Case Studies Seminar (Autumn Semester 2018) | W | 3 credits | 2S | V. C. Gradinaru, R. Hiptmair, K. Nipp, M. Reiher | |
Abstract | In the CSE Case Studies Seminar invited speakers from ETH, from other universities as well as from industry give a talk on an applied topic. Beside of attending the scientific talks students are asked to give short presentations (10 minutes) on a published paper out of a list. | |||||
Objective | ||||||
Prerequisites / Notice | 75% attendance and a short presentation on a published paper out of a list or on some own project are mandatory. Students that realize that they will not fulfill this criteria have to contact the teaching staff or de-register before the end of semester from the Seminar if they want to avoid a "Fail" in their documents. Later de-registrations will not be considered. | |||||
GESS Science in Perspective | ||||||
Science in Perspective | ||||||
» Recommended Science in Perspective (Type B) for D-MATH. | ||||||
» see Science in Perspective: Type A: Enhancement of Reflection Capability | ||||||
Science in Perspective | ||||||
» see Science in Perspective: Language Courses ETH/UZH | ||||||
Colloquia | ||||||
Number | Title | Type | ECTS | Hours | Lecturers | |
401-5650-00L | Zurich Colloquium in Applied and Computational Mathematics | E- | 0 credits | 2K | R. Abgrall, R. Alaifari, H. Ammari, R. Hiptmair, A. Jentzen, C. Jerez Hanckes, S. Mishra, S. Sauter, C. Schwab | |
Abstract | Research colloquium | |||||
Objective |
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