Suchergebnis: Katalogdaten im Herbstsemester 2019
Data Science Master ![]() | ||||||
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Nummer | Titel | Typ | ECTS | Umfang | Dozierende | |
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263-5902-00L | Computer Vision ![]() | W | 7 KP | 3V + 1U + 2A | M. Pollefeys, V. Ferrari, L. Van Gool | |
Kurzbeschreibung | The goal of this course is to provide students with a good understanding of computer vision and image analysis techniques. The main concepts and techniques will be studied in depth and practical algorithms and approaches will be discussed and explored through the exercises. | |||||
Lernziel | The objectives of this course are: 1. To introduce the fundamental problems of computer vision. 2. To introduce the main concepts and techniques used to solve those. 3. To enable participants to implement solutions for reasonably complex problems. 4. To enable participants to make sense of the computer vision literature. | |||||
Inhalt | Camera models and calibration, invariant features, Multiple-view geometry, Model fitting, Stereo Matching, Segmentation, 2D Shape matching, Shape from Silhouettes, Optical flow, Structure from motion, Tracking, Object recognition, Object category recognition | |||||
Voraussetzungen / Besonderes | It is recommended that students have taken the Visual Computing lecture or a similar course introducing basic image processing concepts before taking this course. | |||||
401-0625-01L | Applied Analysis of Variance and Experimental Design ![]() | W | 5 KP | 2V + 1U | L. Meier | |
Kurzbeschreibung | Principles of experimental design, one-way analysis of variance, contrasts and multiple comparisons, multi-factor designs and analysis of variance, complete block designs, Latin square designs, random effects and mixed effects models, split-plot designs, incomplete block designs, two-series factorials and fractional designs, power. | |||||
Lernziel | Participants will be able to plan and analyze efficient experiments in the fields of natural sciences. They will gain practical experience by using the software R. | |||||
Inhalt | Principles of experimental design, one-way analysis of variance, contrasts and multiple comparisons, multi-factor designs and analysis of variance, complete block designs, Latin square designs, random effects and mixed effects models, split-plot designs, incomplete block designs, two-series factorials and fractional designs, power. | |||||
Literatur | G. Oehlert: A First Course in Design and Analysis of Experiments, W.H. Freeman and Company, New York, 2000. | |||||
Voraussetzungen / Besonderes | The exercises, but also the classes will be based on procedures from the freely available, open-source statistical software R, for which an introduction will be held. | |||||
401-3055-64L | Algebraic Methods in Combinatorics ![]() | W | 6 KP | 2V + 1U | B. Sudakov | |
Kurzbeschreibung | Combinatorics is a fundamental mathematical discipline as well as an essential component of many mathematical areas, and its study has experienced an impressive growth in recent years. This course provides a gentle introduction to Algebraic methods, illustrated by examples and focusing on basic ideas and connections to other areas. | |||||
Lernziel | The students will get an overview of various algebraic methods for solving combinatorial problems. We expect them to understand the proof techniques and to use them autonomously on related problems. | |||||
Inhalt | Combinatorics is a fundamental mathematical discipline as well as an essential component of many mathematical areas, and its study has experienced an impressive growth in recent years. While in the past many of the basic combinatorial results were obtained mainly by ingenuity and detailed reasoning, the modern theory has grown out of this early stage and often relies on deep, well-developed tools. One of the main general techniques that played a crucial role in the development of Combinatorics was the application of algebraic methods. The most fruitful such tool is the dimension argument. Roughly speaking, the method can be described as follows. In order to bound the cardinality of of a discrete structure A one maps its elements to vectors in a linear space, and shows that the set A is mapped to linearly independent vectors. It then follows that the cardinality of A is bounded by the dimension of the corresponding linear space. This simple idea is surprisingly powerful and has many famous applications. This course provides a gentle introduction to Algebraic methods, illustrated by examples and focusing on basic ideas and connections to other areas. The topics covered in the class will include (but are not limited to): Basic dimension arguments, Spaces of polynomials and tensor product methods, Eigenvalues of graphs and their application, the Combinatorial Nullstellensatz and the Chevalley-Warning theorem. Applications such as: Solution of Kakeya problem in finite fields, counterexample to Borsuk's conjecture, chromatic number of the unit distance graph of Euclidean space, explicit constructions of Ramsey graphs and many others. The course website can be found at https://moodle-app2.let.ethz.ch/course/view.php?id=11617 | |||||
Skript | Lectures will be on the blackboard only, but there will be a set of typeset lecture notes which follow the class closely. | |||||
Voraussetzungen / Besonderes | Students are expected to have a mathematical background and should be able to write rigorous proofs. | |||||
401-3601-00L | Probability Theory ![]() Höchstens eines der drei Bachelor-Kernfächer 401-3461-00L Funktionalanalysis I / Functional Analysis I 401-3531-00L Differentialgeometrie I / Differential Geometry I 401-3601-00L Wahrscheinlichkeitstheorie / Probability Theory ist im Master-Studiengang Mathematik anrechenbar. | W | 10 KP | 4V + 1U | A.‑S. Sznitman | |
Kurzbeschreibung | Basics of probability theory and the theory of stochastic processes in discrete time | |||||
Lernziel | This course presents the basics of probability theory and the theory of stochastic processes in discrete time. The following topics are planned: Basics in measure theory, random series, law of large numbers, weak convergence, characteristic functions, central limit theorem, conditional expectation, martingales, convergence theorems for martingales, Galton Watson chain, transition probability, Theorem of Ionescu Tulcea, Markov chains. | |||||
Inhalt | This course presents the basics of probability theory and the theory of stochastic processes in discrete time. The following topics are planned: Basics in measure theory, random series, law of large numbers, weak convergence, characteristic functions, central limit theorem, conditional expectation, martingales, convergence theorems for martingales, Galton Watson chain, transition probability, Theorem of Ionescu Tulcea, Markov chains. | |||||
Skript | available, will be sold in the course | |||||
Literatur | R. Durrett, Probability: Theory and examples, Duxbury Press 1996 H. Bauer, Probability Theory, de Gruyter 1996 J. Jacod and P. Protter, Probability essentials, Springer 2004 A. Klenke, Wahrscheinlichkeitstheorie, Springer 2006 D. Williams, Probability with martingales, Cambridge University Press 1991 | |||||
401-3622-00L | Statistical Modelling ![]() | W | 8 KP | 4G | C. Heinze-Deml | |
Kurzbeschreibung | In der Regression wird die Abhängigkeit einer zufälligen Response-Variablen von anderen Variablen untersucht. Wir betrachten die Theorie der linearen Regression mit einer oder mehreren Ko-Variablen, hoch-dimensionale lineare Modelle, nicht-lineare Modelle und verallgemeinerte lineare Modelle, Robuste Methoden, Modellwahl und nicht-parametrische Modelle. | |||||
Lernziel | Einführung in Theorie und Praxis eines umfassenden und vielbenutzten Teilgebiets der Statistik, unter Berücksichtigung neuerer Entwicklungen. | |||||
Inhalt | In der Regression wird die Abhängigkeit einer beobachteten quantitativen Grösse von einer oder mehreren anderen (unter Berücksichtigung zufälliger Fehler) untersucht. Themen der Vorlesung sind: Einfache und multiple Regression, Theorie allgemeiner linearer Modelle, Hoch-dimensionale Modelle, Ausblick auf nichtlineare Modelle. Querverbindungen zur Varianzanalyse, Modellsuche, Residuenanalyse; Einblicke in Robuste Regression. Durchrechnung und Diskussion von Anwendungsbeispielen. | |||||
Skript | Vorlesungsskript | |||||
Voraussetzungen / Besonderes | This is the course unit with former course title "Regression". Credits cannot be recognised for both courses 401-3622-00L Statistical Modelling and 401-0649-00L Applied Statistical Regression in the Mathematics Bachelor and Master programmes (to be precise: one course in the Bachelor and the other course in the Master is also forbidden). | |||||
401-3627-00L | High-Dimensional Statistics | W | 4 KP | 2V | P. L. Bühlmann | |
Kurzbeschreibung | "High-Dimensional Statistics" deals with modern methods and theory for statistical inference when the number of unknown parameters is of much larger order than sample size. Statistical estimation and algorithms for complex models and aspects of multiple testing will be discussed. | |||||
Lernziel | Knowledge of methods and basic theory for high-dimensional statistical inference | |||||
Inhalt | Lasso and Group Lasso for high-dimensional linear and generalized linear models; Additive models and many smooth univariate functions; Non-convex loss functions and l1-regularization; Stability selection, multiple testing and construction of p-values; Undirected graphical modeling | |||||
Literatur | Peter Bühlmann and Sara van de Geer (2011). Statistics for High-Dimensional Data: Methods, Theory and Applications. Springer Verlag. ISBN 978-3-642-20191-2. | |||||
Voraussetzungen / Besonderes | Knowledge of basic concepts in probability theory, and intermediate knowledge of statistics (e.g. a course in linear models or computational statistics). | |||||
401-3901-00L | Mathematical Optimization ![]() | W | 11 KP | 4V + 2U | R. Zenklusen | |
Kurzbeschreibung | Mathematical treatment of diverse optimization techniques. | |||||
Lernziel | The goal of this course is to get a thorough understanding of various classical mathematical optimization techniques with an emphasis on polyhedral approaches. In particular, we want students to develop a good understanding of some important problem classes in the field, of structural mathematical results linked to these problems, and of solution approaches based on this structural understanding. | |||||
Inhalt | Key topics include: - Linear programming and polyhedra; - Flows and cuts; - Combinatorial optimization problems and techniques; - Equivalence between optimization and separation; - Brief introduction to Integer Programming. | |||||
Literatur | - Bernhard Korte, Jens Vygen: Combinatorial Optimization. 6th edition, Springer, 2018. - Alexander Schrijver: Combinatorial Optimization: Polyhedra and Efficiency. Springer, 2003. This work has 3 volumes. - Ravindra K. Ahuja, Thomas L. Magnanti, James B. Orlin. Network Flows: Theory, Algorithms, and Applications. Prentice Hall, 1993. - Alexander Schrijver: Theory of Linear and Integer Programming. John Wiley, 1986. | |||||
Voraussetzungen / Besonderes | Solid background in linear algebra. | |||||
401-3612-00L | Stochastic Simulation Findet dieses Semester nicht statt. | W | 5 KP | 3G | ||
Kurzbeschreibung | This course provides an introduction to statistical Monte Carlo methods. This includes applications of simulations in various fields (Bayesian statistics, statistical mechanics, operations research, financial mathematics), algorithms for the generation of random variables (accept-reject, importance sampling), estimating the precision, variance reduction, introduction to Markov chain Monte Carlo. | |||||
Lernziel | Stochastic simulation (also called Monte Carlo method) is the experimental analysis of a stochastic model by implementing it on a computer. Probabilities and expected values can be approximated by averaging simulated values, and the central limit theorem gives an estimate of the error of this approximation. The course shows examples of the many applications of stochastic simulation and explains different algorithms used for simulation. These algorithms are illustrated with the statistical software R. | |||||
Inhalt | Examples of simulations in different fields (computer science, statistics, statistical mechanics, operations research, financial mathematics). Generation of uniform random variables. Generation of random variables with arbitrary distributions (quantile transform, accept-reject, importance sampling), simulation of Gaussian processes and diffusions. The precision of simulations, methods for variance reduction. Introduction to Markov chains and Markov chain Monte Carlo (Metropolis-Hastings, Gibbs sampler, Hamiltonian Monte Carlo, reversible jump MCMC). | |||||
Skript | A script will be available in English. | |||||
Literatur | P. Glasserman, Monte Carlo Methods in Financial Engineering. Springer 2004. B. D. Ripley. Stochastic Simulation. Wiley, 1987. Ch. Robert, G. Casella. Monte Carlo Statistical Methods. Springer 2004 (2nd edition). | |||||
Voraussetzungen / Besonderes | Familiarity with basic concepts of probability theory (random variables, joint and conditional distributions, laws of large numbers and central limit theorem) will be assumed. | |||||
401-4619-67L | Advanced Topics in Computational Statistics Findet dieses Semester nicht statt. | W | 4 KP | 2V | keine Angaben | |
Kurzbeschreibung | This lecture covers selected advanced topics in computational statistics. This year the focus will be on graphical modelling. | |||||
Lernziel | Students learn the theoretical foundations of the selected methods, as well as practical skills to apply these methods and to interpret their outcomes. | |||||
Inhalt | The main focus will be on graphical models in various forms: Markov properties of undirected graphs; Belief propagation; Hidden Markov Models; Structure estimation and parameter estimation; inference for high-dimensional data; causal graphical models | |||||
Voraussetzungen / Besonderes | We assume a solid background in mathematics, an introductory lecture in probability and statistics, and at least one more advanced course in statistics. | |||||
401-4623-00L | Time Series Analysis Findet dieses Semester nicht statt. | W | 6 KP | 3G | N. Meinshausen | |
Kurzbeschreibung | Statistical analysis and modeling of observations in temporal order, which exhibit dependence. Stationarity, trend estimation, seasonal decomposition, autocorrelations, spectral and wavelet analysis, ARIMA-, GARCH- and state space models. Implementations in the software R. | |||||
Lernziel | Understanding of the basic models and techniques used in time series analysis and their implementation in the statistical software R. | |||||
Inhalt | This course deals with modeling and analysis of variables which change randomly in time. Their essential feature is the dependence between successive observations. Applications occur in geophysics, engineering, economics and finance. Topics covered: Stationarity, trend estimation, seasonal decomposition, autocorrelations, spectral and wavelet analysis, ARIMA-, GARCH- and state space models. The models and techniques are illustrated using the statistical software R. | |||||
Skript | Not available | |||||
Literatur | A list of references will be distributed during the course. | |||||
Voraussetzungen / Besonderes | Basic knowledge in probability and statistics | |||||
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Nummer | Titel | Typ | ECTS | Umfang | Dozierende | |
227-1033-00L | Neuromorphic Engineering I ![]() ![]() Registration in this class requires the permission of the instructors. Class size will be limited to available lab spots. Preference is given to students that require this class as part of their major. | W | 6 KP | 2V + 3U | T. Delbrück, G. Indiveri, S.‑C. Liu | |
Kurzbeschreibung | This course covers analog circuits with emphasis on neuromorphic engineering: MOS transistors in CMOS technology, static circuits, dynamic circuits, systems (silicon neuron, silicon retina, silicon cochlea) with an introduction to multi-chip systems. The lectures are accompanied by weekly laboratory sessions. | |||||
Lernziel | Understanding of the characteristics of neuromorphic circuit elements. | |||||
Inhalt | Neuromorphic circuits are inspired by the organizing principles of biological neural circuits. Their computational primitives are based on physics of semiconductor devices. Neuromorphic architectures often rely on collective computation in parallel networks. Adaptation, learning and memory are implemented locally within the individual computational elements. Transistors are often operated in weak inversion (below threshold), where they exhibit exponential I-V characteristics and low currents. These properties lead to the feasibility of high-density, low-power implementations of functions that are computationally intensive in other paradigms. Application domains of neuromorphic circuits include silicon retinas and cochleas for machine vision and audition, real-time emulations of networks of biological neurons, and the development of autonomous robotic systems. This course covers devices in CMOS technology (MOS transistor below and above threshold, floating-gate MOS transistor, phototransducers), static circuits (differential pair, current mirror, transconductance amplifiers, etc.), dynamic circuits (linear and nonlinear filters, adaptive circuits), systems (silicon neuron, silicon retina and cochlea) and an introduction to multi-chip systems that communicate events analogous to spikes. The lectures are accompanied by weekly laboratory sessions on the characterization of neuromorphic circuits, from elementary devices to systems. | |||||
Literatur | S.-C. Liu et al.: Analog VLSI Circuits and Principles; various publications. | |||||
Voraussetzungen / Besonderes | Particular: The course is highly recommended for those who intend to take the spring semester course 'Neuromorphic Engineering II', that teaches the conception, simulation, and physical layout of such circuits with chip design tools. Prerequisites: Background in basics of semiconductor physics helpful, but not required. | |||||
227-0421-00L | Learning in Deep Artificial and Biological Neuronal Networks | W | 4 KP | 3G | B. Grewe | |
Kurzbeschreibung | Deep-Learning (DL) a brain-inspired weak for of AI allows training of large artificial neuronal networks (ANNs) that, like humans, can learn real-world tasks such as recognizing objects in images. However, DL is far from being understood and investigating learning in biological networks might serve again as a compelling inspiration to think differently about state-of-the-art ANN training methods. | |||||
Lernziel | The main goal of this lecture is to provide a comprehensive overview into the learning principles neuronal networks as well as to introduce a diverse skill set (e.g. simulating a spiking neuronal network) that is required to understand learning in large, hierarchical neuronal networks. To achieve this the lectures and exercises will merge ideas, concepts and methods from machine learning and neuroscience. These will include training basic ANNs, simulating spiking neuronal networks as well as being able to read and understand the main ideas presented in today’s neuroscience papers. After this course students will be able to: - read and understand the main ideas and methods that are presented in today’s neuroscience papers - explain the basic ideas and concepts of plasticity in the mammalian brain - implement alternative ANN learning algorithms to ‘error backpropagation’ in order to train deep neuronal networks. - use a diverse set of ANN regularization methods to improve learning - simulate spiking neuronal networks that learn simple (e.g. digit classification) tasks in a supervised manner. | |||||
Inhalt | Deep-learning a brain-inspired weak form of AI allows training of large artificial neuronal networks (ANNs) that, like humans, can learn real-world tasks such as recognizing objects in images. The origins of deep hierarchical learning can be traced back to early neuroscience research by Hubel and Wiesel in the 1960s, who first described the neuronal processing of visual inputs in the mammalian neocortex. Similar to their neocortical counterparts ANNs seem to learn by interpreting and structuring the data provided by the external world. However, while on specific tasks such as playing (video) games deep ANNs outperform humans (Minh et al, 2015, Silver et al., 2018), ANNs are still not performing on par when it comes to recognizing actions in movie data and their ability to act as generalizable problem solvers is still far behind of what the human brain seems to achieve effortlessly. Moreover, biological neuronal networks can learn far more effectively with fewer training examples, they achieve a much higher performance in recognizing complex patterns in time series data (e.g. recognizing actions in movies), they dynamically adapt to new tasks without losing performance and they achieve unmatched performance to detect and integrate out-of-domain data examples (data they have not been trained with). In other words, many of the big challenges and unknowns that have emerged in the field of deep learning over the last years are already mastered exceptionally well by biological neuronal networks in our brain. On the other hand, many facets of typical ANN design and training algorithms seem biologically implausible, such as the non-local weight updates, discrete processing of time, and scalar communication between neurons. Recent evidence suggests that learning in biological systems is the result of the complex interplay of diverse error feedback signaling processes acting at multiple scales, ranging from single synapses to entire networks. | |||||
Skript | The lecture slides will be provided as a PDF after each lecture. | |||||
Voraussetzungen / Besonderes | This advanced level lecture requires some basic background in machine/deep learning. Thus, students are expected to have a basic mathematical foundation, including linear algebra, multivariate calculus, and probability. The course is not to be meant as an extended tutorial of how to train deep networks in PyTorch or Tensorflow, although these tools used. The participation in the course is subject to the following conditions: 1) The number of participants is limited to 120 students (MSc and PhDs). 2) Students must have taken the exam in Deep Learning (263-3210-00L) or have acquired equivalent knowledge. | |||||
227-0945-00L | Cell and Molecular Biology for Engineers I This course is part I of a two-semester course. | W | 3 KP | 2G | C. Frei | |
Kurzbeschreibung | The course gives an introduction into cellular and molecular biology, specifically for students with a background in engineering. The focus will be on the basic organization of eukaryotic cells, molecular mechanisms and cellular functions. Textbook knowledge will be combined with results from recent research and technological innovations in biology. | |||||
Lernziel | After completing this course, engineering students will be able to apply their previous training in the quantitative and physical sciences to modern biology. Students will also learn the principles how biological models are established, and how these models can be tested. | |||||
Inhalt | Lectures will include the following topics (part I and II): DNA, chromosomes, RNA, protein, genetics, gene expression, membrane structure and function, vesicular traffic, cellular communication, energy conversion, cytoskeleton, cell cycle, cellular growth, apoptosis, autophagy, cancer, development and stem cells. In addition, 4 journal clubs will be held, where recent publications will be discussed (2 journal clubs in part I and 2 journal clubs in part II). For each journal club, students (alone or in groups of up to three students) have to write a summary and discussion of the publication. These written documents will be graded and count as 40% for the final grade. | |||||
Skript | Scripts of all lectures will be available. | |||||
Literatur | "Molecular Biology of the Cell" (6th edition) by Alberts, Johnson, Lewis, Raff, Roberts, and Walter. | |||||
261-5100-00L | Computational Biomedicine ![]() ![]() Number of participants limited to 60. | W | 5 KP | 2V + 1U + 1A | G. Rätsch, V. Boeva, N. Davidson | |
Kurzbeschreibung | The course critically reviews central problems in Biomedicine and discusses the technical foundations and solutions for these problems. | |||||
Lernziel | Over the past years, rapid technological advancements have transformed classical disciplines such as biology and medicine into fields of apllied data science. While the sheer amount of the collected data often makes computational approaches inevitable for analysis, it is the domain specific structure and close relation to research and clinic, that call for accurate, robust and efficient algorithms. In this course we will critically review central problems in Biomedicine and will discuss the technical foundations and solutions for these problems. | |||||
Inhalt | The course will consist of three topic clusters that will cover different aspects of data science problems in Biomedicine: 1) String algorithms for the efficient representation, search, comparison, composition and compression of large sets of strings, mostly originating from DNA or RNA Sequencing. This includes genome assembly, efficient index data structures for strings and graphs, alignment techniques as well as quantitative approaches. 2) Statistical models and algorithms for the assessment and functional analysis of individual genomic variations. this includes the identification of variants, prediction of functional effects, imputation and integration problems as well as the association with clinical phenotypes. 3) Models for organization and representation of large scale biomedical data. This includes ontolgy concepts, biomedical databases, sequence annotation and data compression. | |||||
Voraussetzungen / Besonderes | Data Structures & Algorithms, Introduction to Machine Learning, Statistics/Probability, Programming in Python, Unix Command Line | |||||
261-5112-00L | Advanced Approaches for Population Scale Compressive Genomics ![]() Number of participants limited to 30. | W | 3 KP | 2G | A. Kahles | |
Kurzbeschreibung | Research in Biology and Medicine have been transformed into disciplines of applied data science over the past years. Not only size and inherentcomplexity of the data but also requirements on data privacy and complexity of search and access pose a wealth of new research questions. | |||||
Lernziel | This interactive course will explore the latest research on algorithms and data structures for population scale genomics applications and give insights into both the technical basis as well as the domain questions motivating it. | |||||
Inhalt | Over the duration of the semester, the course will cover three main topics. Each of the topics will consist of 70-80% lecture content and 20-30% seminar content. 1) Algorithms and data structures for text and graph compression. Motivated through applications in compressive genomics, the course will cover succinct indexing schemes for strings, trees and general graphs, compression schemes for binary matrices as well as the efficient representation of haplotypes and genomic variants. 2) Stochastic data structures and algorithms for approximate representation of strings and graphs as well as sets in general. This includes winnowing schemes and minimizers, sketching techniques, (minimal perfect) hashing and approximate membership query data structures. 3) Data structures supporting encryption and data privacy. As an extension to data structures discussed in the earlier topics, this will include secure indexing using homomorphic encryption as well as design for secure storage and distribution of data. | |||||
636-0017-00L | Computational Biology ![]() | W | 6 KP | 3G + 2A | T. Vaughan, T. Stadler | |
Kurzbeschreibung | The aim of the course is to provide up-to-date knowledge on how we can study biological processes using genetic sequencing data. Computational algorithms extracting biological information from genetic sequence data are discussed, and statistical tools to understand this information in detail are introduced. | |||||
Lernziel | Attendees will learn which information is contained in genetic sequencing data and how to extract information from this data using computational tools. The main concepts introduced are: * stochastic models in molecular evolution * phylogenetic & phylodynamic inference * maximum likelihood and Bayesian statistics Attendees will apply these concepts to a number of applications yielding biological insight into: * epidemiology * pathogen evolution * macroevolution of species | |||||
Inhalt | The course consists of four parts. We first introduce modern genetic sequencing technology, and algorithms to obtain sequence alignments from the output of the sequencers. We then present methods for direct alignment analysis using approaches such as BLAST and GWAS. Second, we introduce mechanisms and concepts of molecular evolution, i.e. we discuss how genetic sequences change over time. Third, we employ evolutionary concepts to infer ancestral relationships between organisms based on their genetic sequences, i.e. we discuss methods to infer genealogies and phylogenies. Lastly, we introduce the field of phylodynamics, the aim of which is to understand and quantify population dynamic processes (such as transmission in epidemiology or speciation & extinction in macroevolution) based on a phylogeny. Throughout the class, the models and methods are illustrated on different datasets giving insight into the epidemiology and evolution of a range of infectious diseases (e.g. HIV, HCV, influenza, Ebola). Applications of the methods to the field of macroevolution provide insight into the evolution and ecology of different species clades. Students will be trained in the algorithms and their application both on paper and in silico as part of the exercises. | |||||
Skript | Lecture slides will be available on moodle. | |||||
Literatur | The course is not based on any of the textbooks below, but they are excellent choices as accompanying material: * Yang, Z. 2006. Computational Molecular Evolution. * Felsenstein, J. 2004. Inferring Phylogenies. * Semple, C. & Steel, M. 2003. Phylogenetics. * Drummond, A. & Bouckaert, R. 2015. Bayesian evolutionary analysis with BEAST. | |||||
Voraussetzungen / Besonderes | Basic knowledge in linear algebra, analysis, and statistics will be helpful. Programming in R will be required for the project work (compulsory continuous performance assessments). We provide an R tutorial and help sessions during the first two weeks of class to learn the required skills. However, in case you do not have any previous experience with R, we strongly recommend to get familiar with R prior to the semester start. For the D-BSSE students, we highly recommend the voluntary course „Introduction to Programming“, which takes place at D-BSSE from Wednesday, September 12 to Friday, September 14, i.e. BEFORE the official semester starting date http://www.cbb.ethz.ch/news-events.html For the Zurich-based students without R experience, we recommend the R course Link, or working through the script provided as part of this R course. | |||||
701-0023-00L | Atmosphäre ![]() | W | 3 KP | 2V | E. Fischer, T. Peter | |
Kurzbeschreibung | Grundlagen der Atmosphäre, physikalischer Aufbau und chemische Zusammensetzung, Spurengase, Kreisläufe in der Atmosphäre, Zirkulation, Stabilität, Strahlung, Kondensation, Wolken, Oxidationspotential und Ozonschicht. | |||||
Lernziel | Verständnis grundlegender physikalischer und chemischer Prozesse in der Atmosphäre. Kenntnis über die Mechanismen und Zusammenhänge von: Wetter - Klima, Atmosphäre - Ozeane - Kontinente, Troposphäre - Stratosphäre. Verständnis von umweltrelevanten Strukturen und Vorgängen in sehr unterschiedlichem Massstab. Grundlagen für eine modellmässige Darstellung komplexer Zusammenhänge in der Atmosphäre. | |||||
Inhalt | Grundlagen der Atmosphäre, physikalischer Aufbau und chemische Zusammensetzung, Spurengase, Kreisläufe in der Atmosphäre, Zirkulation, Stabilität, Strahlung, Kondensation, Wolken, Oxidationspotential und Ozonschicht. | |||||
Skript | Schriftliche Unterlagen werden abgegeben. | |||||
Literatur | - John H. Seinfeld and Spyros N. Pandis, Atmospheric Chemistry and Physics: From Air Pollution to Climate Change, Wiley, New York, 1998. - Gösta H. Liljequist, Allgemeine Meteorologie, Vieweg, Braunschweig, 1974. | |||||
701-0473-00L | Wettersysteme ![]() | W | 3 KP | 2G | M. A. Sprenger, F. S. Scholder-Aemisegger | |
Kurzbeschreibung | Satellitenbeobachtungen; Analyse vertikaler Sondierungen; Geostrophischer und thermischer Wind; Tiefdruckwirbel in den mittleren Breiten; globalen Zirkulation; Nordatlantische Oszillation; Atmosphärische Blockierungswetterlagen; Eulersche und Lagrange Perspektive der Dynamik; Potentielle Vortizität; Alpine Dynamik (Windstürme, Um- und Überströmung von Gebirgen); Planetare Grenzschicht | |||||
Lernziel | Die Studierenden können: - die gängigen Mess- und Analysemethoden der Atmosphärendynamik erklären - mathematische Grundlagen der Atmosphärendynamik beispielhaft erklären - die Dynamik von globalen und synoptisch-skaligen Prozessen erklären - den Einfluss von Gebirgen auf die Atmosphärendynamik erklären | |||||
Inhalt | Satellitenbeobachtungen; Analyse vertikaler Sondierungen; Geostrophischer und thermischer Wind; Tiefdruckwirbel in den mittleren Breiten; Überblick und Energetik der globalen Zirkulation; Nordatlantische Oszillation; Atmosphärische Blockierungswetterlagen; Eulersche und Lagrange Perspektive der Dynamik; Potentielle Vortizität; Alpine Dynamik (Windstürme, Um- und Überströmung von Gebirgen); Planetare Grenzschicht | |||||
Skript | Vorlesungsskript + Folien | |||||
Literatur | Atmospheric Science, An Introductory Survey John M. Wallace and Peter V. Hobbs, Academic Press | |||||
701-1251-00L | Land-Climate Dynamics ![]() ![]() Number of participants limited to 36. | W | 3 KP | 2G | S. I. Seneviratne, E. L. Davin | |
Kurzbeschreibung | The purpose of this course is to provide fundamental background on the role of land surface processes (vegetation, soil moisture dynamics, land energy and water balances) in the climate system. The course consists of 2 contact hours per week, including lectures, group projects and computer exercises. | |||||
Lernziel | The students can understand the role of land processes and associated feedbacks in the climate system. | |||||
Skript | Powerpoint slides will be made available | |||||
Voraussetzungen / Besonderes | Prerequisites: Introductory lectures in atmospheric and climate science Atmospheric physics -> Link and/or Climate systems -> Link | |||||
101-0417-00L | Transport Planning Methods | W | 6 KP | 4G | K. W. Axhausen | |
Kurzbeschreibung | The course provides the necessary knowledge to develop models supporting and also evaluating the solution of given planning problems. The course is composed of a lecture part, providing the theoretical knowledge, and an applied part in which students develop their own models in order to evaluate a transport project/ policy by means of cost-benefit analysis. | |||||
Lernziel | - Knowledge and understanding of statistical methods and algorithms commonly used in transport planning - Comprehend the reasoning and capabilities of transport models - Ability to independently develop a transport model able to solve / answer planning problem - Getting familiar with cost-benefit analysis as a decision-making supporting tool | |||||
Inhalt | The course provides the necessary knowledge to develop models supporting the solution of given planning problems and also introduces cost-benefit analysis as a decision-making tool. Examples of such planning problems are the estimation of traffic volumes, prediction of estimated utilization of new public transport lines, and evaluation of effects (e.g. change in emissions of a city) triggered by building new infrastructure and changes to operational regulations. To cope with that, the problem is divided into sub-problems, which are solved using various statistical models (e.g. regression, discrete choice analysis) and algorithms (e.g. iterative proportional fitting, shortest path algorithms, method of successive averages). The course is composed of a lecture part, providing the theoretical knowledge, and an applied part in which students develop their own models in order to evaluate a transport project/ policy by means of cost-benefit analysis. Interim lab session take place regularly to guide and support students with the applied part of the course. | |||||
Skript | Moodle platform (enrollment needed) | |||||
Literatur | Willumsen, P. and J. de D. Ortuzar (2003) Modelling Transport, Wiley, Chichester. Cascetta, E. (2001) Transportation Systems Engineering: Theory and Methods, Kluwer Academic Publishers, Dordrecht. Sheffi, Y. (1985) Urban Transportation Networks: Equilibrium Analysis with Mathematical Programming Methods, Prentice Hall, Englewood Cliffs. Schnabel, W. and D. Lohse (1997) Verkehrsplanung, 2. edn., vol. 2 of Grundlagen der Strassenverkehrstechnik und der Verkehrsplanung, Verlag für Bauwesen, Berlin. McCarthy, P.S. (2001) Transportation Economics: A case study approach, Blackwell, Oxford. |
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